The exhaustive list of topics in Computational Molecular Biology in which we provide Help with Homework Assignment and Help with Project is as follows:
- Central Dogma
- Enumerative Solutions: Partial Digest Problem and Median Strings
- Partial Digest Problem
- Motifs and Median Strings
- Dynamic Programming: Sequence Alignments
- Global Alignment
- Local Alignment
- Spliced Alignment
- More Efficient Alignment
- Graph Theory: Sequencing Genes and Proteins
- Genomics and SBH Graphs
- Peptide Graphs
- Pattern Matching: Exact Matches, Gapless Alignments, and BLAST
- Exact Pattern Matching
- Suffix Trees
- Suffix Arrays and BWTs
- Clustering: Microarrays and Phylogeny
- Trees
- Neighbor Joining
- Review of Phylogenetic Analysis
- Coalescent Theory in Biology
- Microarrays
- Probabilistic Models and Machine Learning: Gene Annotation and Evolution
- Hidden Markov Models
- Gibbs Sampling
- Random Projections
- MCMC and Bayesian Networks
- Horizons
- Protein Structure
- Haplotype Mapping