The exhaustive list of topics in Molecular Simulation Methods in which we provide Help with Homework Assignment and Help with Project is as follows:
- Atomic and molecular interactions
- Surface effects and the concept of PBC
- Generalized coordinates and equations of motions
- Finite difference methods of solving differential equations
- Short- vs. long-range interactions (potential truncation)
- tatistical Mechanics: Time average vs. ensemble average properties
- Measurement of temperature and its control
- Methods of setting up model simulation systems
- Equilibration
- Development of a molecular dynamics (MD) code of simple Lennard-Jones fluid
- Monte Carlo (MC) method: Metropolis importance sampling technique
- Development of a MC code
- Methods to analyze results
- MC methods